How to create comparative plots of inference results¶
analyze benchmarking results for the CASP15 dataset¶
python3 multicom_ligand/analysis/inference_analysis_casp.py method=ensemble dataset=casp15 ensemble_ranking_method=consensus repeat_index=1 … ```
To benchmark ensemble ranking using the above commands, you must have already run the corresponding *_inference.py
script for each method described in the section How to run inference with individual methods (with the exception of FABind
, which will not referenced during CASP15 benchmarking)
NOTE: In addition to having consensus
as an available value for ensemble_ranking_method
, one can also set ensemble_ranking_method=ff
to have the method ensemble’s top-ranked predictions selected using the criterion of “minimum (molecular dynamics) force field energy” (albeit while incurring a very large runtime complexity)