Model utilities

posebench.utils.model_utils.calculate_rmsd(positions1: array, positions2: array) float[source]

Calculate the root-mean-square deviation (RMSD) between two sets of positions.

Parameters:
  • positions1 – Array of positions for the first set of atoms.

  • positions2 – Array of positions for the second set of atoms.

Returns:

RMSD between the two sets of positions.